Chromatin IMaging Analysis tool (CIMA)

Our group is developing a Python library aimed at facilitating the analysis of chromatin imaging data 

Integrative Modeling of Genomic Regions IMGR 

IMGR is inspired by the fitting of proteins to cryoEM density maps and integrates different modalities of data to produce accurate 3D models of genomic regions based on imaging data and interaction data.

Sparse data modelling 

Integrative modelling method to reconstruct an ensemble of 3D chromatin conformations from sparse 3C-based datasets